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sablok gaurav (curatore); kumar sunil (curatore); ueno saneyoshi (curatore); kuo jimmy (curatore); varotto claudio (curatore) - advances in the understanding of biological sciences using next generation sequencing (ngs) approaches

Advances in the Understanding of Biological Sciences Using Next Generation Sequencing (NGS) Approaches

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Spese Gratis

Dettagli

Genere:Libro
Lingua: Inglese
Editore:

Springer

Pubblicazione: 10/2016
Edizione: Softcover reprint of the original 1st ed. 2015





Trama

Provides a global view of the recent advances in the biological sciences and the adaption of the pathogen to the host plants revealed using NGS. Molecular Omic’s is now a major driving force to learn the adaption genetics and a great challenge to the scientific community, which can be resolved through the application of the NGS technologies. The availability of complete genome sequences, the respective model species for dicot and monocot plant groups, presents a global opportunity to delineate the identification, function and the expression of the genes, to develop new tools for the identification of the new genes and pathway identification. Genome-wide research tools, resources and approaches such as data mining for structural similarities, gene expression profiling at the DNA and RNA level with rapid increase in available genome sequencing efforts, expressed sequence tags (ESTs), RNA-seq, gene expression profiling, induced deletion mutants and insertional mutants, and gene expression knock-down (gene silencing) studies with RNAi and microRNAs have become integral parts of plant molecular omic’s. Molecular diversity and mutational approaches present the first line of approach to unravel the genetic and molecular basis for several traits, QTL related to disease resistance, which includes host approaches to combat the pathogens and to understand the adaptation of the pathogen to the plant host. Using NGS technologies, understanding of adaptation genetics towards stress tolerance has been correlated to the epigenetics. Naturally occurring allelic variations, genome shuffling and variations induced by chemical or radiation mutagenesis are also being used in functional genomics to elucidate the pathway for the pathogen and stress tolerance and is widely illustrated in demonstrating the identification of the genes responsible for tolerance in plants, bacterial and fungal species.




Sommario

Ch. 1: Expression analysis and genome annotations with RNA sequencing

 

            Masaaki Kobayashi, Hajime Ohyanagi, Kentaro Yano

 

Ch. 2: The application of Next Generation Sequencing techniques to Plant

Epigenomics

 

            Manu J. Dubin

 

Ch. 3: Whole genome sequencing to identify genes and QTL in rice

 

Ryohei Terauchi, Akira Abe, Hiroki Takagi, Muluneh Tamiru, Rym Fekih, Satoshi Natsume, Hiroki Yaegashi, Shunichi Kosugi, Hiroyuki Kanzaki, Hideo Matsumura, Hiromasa Saitoh, Kentaro Yoshida, Liliana Cano, Sophien Kamoun

 

Ch. 4: Variant calling using NGS data in European aspen (Populus tremula)

 

Jing Wang, Douglas Scofield, Nathaniel R. Street, Pär K. Ingvarsson

 

Ch. 5: Leafy Spurge Genomics: A Model Perennial Weed To

Investigate Development, Stress Responses, And Invasiveness

 

David Horvath, James Anderson, Wun Chao, Michael Foley, Münevver Dogramaci 

 

Ch. 6: Utilization of NGS and proteomic-based approaches to gain insights on

cellular responses to singlet oxygen and improve energy yields for bacterial stress adaptation

 

Roger Greenwell, Mobashar Hussain Urf Turabe Fazil, H P Pandey.

 

Ch. 7: Experimental evolution and next generation sequencing illuminate the

evolutionary trajectories of microbes

 

Mario Fares

 

 

 

 

Ch. 8: Plant carbohydrate active enzyme (CAZyme) repertoires: a comparative

Study

 

Huansheng Cao, Alex Ekstrom, Yanbin Yin

 

Ch. 9: Metagenomics of Plant- Microbe Interactions

 

Riccardo Rosselli, Andrea Squartini

 

            Ch. 10: Genes and trans-factors underlying embryogenic transition in plant

soma-cells

 

Dhananjay K. Pandey, Bhupendra Chaudhary

 

 

            Ch. 11: Bioinformatics tools to analyze the proteome and genome data

 

                        Ritesh Kumar, Shalini Singh, Vikash Kumar Dubey

 

 

            Ch. 12: High through-put transcriptome analysis of plant stress responses

 

                        Hüseyin Tombuloglu, Güzin Tombuloglu

 

           

            Ch. 13: CNV and structural variation in plants: prospects of NGS

                      Approaches

 

                      Enrico Francia, Nicola Pecchioni, Alberto Policriti, Simone Scalabrin





Autore

Guarav Sablok, PhD

Research Fellow, Plant Functional Biology and Climate Change Cluster (C3)

University of Technology, Sydney

PO Box 123

Broadway NSW 2007 Australia

T:: 0039-3270484-732

Email: sablokg@gmail.com

Sunil Kumar, M.Sc ,IPR, MCA, Ph.D

Senior Scientist, Department of Bioinformatics

Institute of Life Sciences

Nalco Square, C S Pur

Bhubaneswar, Odisha 275103, India

T: 91-6742301500

F: 91-6742300728

E-mail: skybiotech@gmail.com

Jimmy Kuo, Ph.D

Associate Researcher, National Museum of Marine Biology and Aquarium

Graduate Institute of Marine Biotechnology, National Dong Haw University

2 Houwan Road, Checheng

Pingtung 944, Taiwan

Tel: 886-8-8825001 ext. 1358

Fax: 886-8-8825087

E-mail: jimmy@nmmba.gov.tw

Saneyoshi Ueno, Ph.D

Department of Forest Genetics

1 Matsunosato, Tsukuba

Ibaraki 3058687, Japan

T: +81-29-8733211

F: +81-29-8743720

Email: saueno@ffpri.affrc.go.jp

Claudio Varotto, Msc, Ph.D

Department of Biodiversity and Molecular Ecology, Research and Innovation Center

Fondazione Edmund Mach, Research and Innovation Center

Via E. Mach 1, 38010 San Michele all’Adige (TN), Italy

T: +39 0461 615 108

F: +390461650956

Email: claudio.varotto@fmach.it











Altre Informazioni

ISBN:

9783319344843

Condizione: Nuovo
Dimensioni: 235 x 155 mm Ø 4393 gr
Formato: Brossura
Illustration Notes:XII, 241 p. 40 illus., 31 illus. in color.
Pagine Arabe: 241
Pagine Romane: xii


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