CpG Islands Methods and Protocols

CpG Islands: A Historical Perspective.- Biochemical Identification of Non-Methylated DNA by BioCAP-Seq.- Prediction of CpG Islands as an Intrinsic Clustering Property Found in Many Eukaryotic DNA Sequences and Its Relation to DNA Methylation.- CpG Islands in Cancer: Heads, Tails, and Sides.- Infinium DNA Methylation Microarrays on Formalin-Fixed Paraffin-Embedded Samples.- The Use of Methylation-Sensitive Multiplex Ligation-Dependent Probe Amplification for Quantification of Imprinted Methylation.- The Pancancer DNA Methylation Trackhub: A Window to The Cancer Genome Atlas Epigenomics Data.- Methylation-Sensitive Amplification Length Polymorphism (MS-AFLP) Microarrays for Epigenetic Analysis of Human Genomes.- Genome-Wide Profiling of DNA Methyltransferases in Mammalian Cells.- Experimental Design and Bioinformatic Analysis of DNA Methylation Data.- Assay for Transposase Accessible Chromatin (ATAC-Seq) to Chart the Open Chromatin Landscape of Human Pancreatic Islets.- Defining Regulatory Elements in the Human Genome Using Nucleosome Occupancy and Methylome Sequencing (NOMe-Seq).- Genome-Wide Mapping of Protein-DNA Interactions on Nascent Chromatin.- Analysis of Chromatin Interactions Mediated by Specific Architectural Proteins in Drosophila Cells.- High-Throughput Single-Cell RNA Sequencing and Data Analysis.- Functional Insulator Scanning of CpG Islands to Identify Regulatory Regions of Promoters Using CRISPR.- An Application-Directed, Versatile DNA FISH Platform for Research and Diagnostics.